Feat/dpop

[Avantol13]

Depends on:

• Feat/dpop authutils#113
• Feat/dpop fence#1372
  ⚠️ Merge those first and then update authutils here!

New Features

• DPoP support (CLI & SDK)
• Nextflow run support utilizing DPoP (CLI & SDK)

Breaking Changes

• 3.13 only due to required updates from upstream dependencies, including authutils and other Gen3 libraries (this matches the Python version used and required by other Gen3 services)

Bug Fixes

Improvements

• Unit tests parallelized, down to ~7s from ~40s locally (w/ the new tests included) - looks like existing runs would take ~30s before these new tests and on this branch they take ~17s, so still almost half the time with many new tests added
• Rip out coupling to indexd by actually mocking in unit tests

Dependency updates

Deployment changes

[github-actions]

The style in this PR agrees with black. ✔️

This formatting comment was generated automatically by a script in uc-cdis/wool.

[github-actions]

Integration Tests

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_dbgap.py	4	0	1	5
tests/test_ras_passport.py	0	0	2	2
tests/test_data_upload.py	8	0	1	9
tests/test_graph_submit_and_query.py	12	1	1	14
tests/test_presigned_url.py	7	0	0	7
tests/test_centralized_auth.py	5	0	0	5
tests/test_google_data_access.py	1	0	0	1
tests/test_audit_service.py	1	0	0	1
tests/test_drs_endpoint.py	2	0	0	2
tests/test_gen3_sdk.py	1	0	0	1
TOTAL	41	1	5	47

Test summary after rerunning failed integration tests

filepath	passed	SUBTOTAL
tests/test_graph_submit_and_query.py	1	1
TOTAL	1	1

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here