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manuscript content integration - #49

Merged

gregcaporaso merged 9 commits into

mainfrom

manuscript-integration

Oct 7, 2026

Merged

manuscript content integration#49
gregcaporaso merged 9 commits into
mainfrom
manuscript-integration

Commits on Oct 7, 2026
- NEW: port the manuscript text into the online tutorial (AI-assisted migration)
  
  gregcaporaso
  and
  claude
  committed
  8841061
- IMP: apply @gregcaporaso's first manual review of the migrated tutorial
  
  gregcaporaso
  and
  claude
  committed
  10f9932
- IMP: add a citation note to the top of the tutorial
  
  gregcaporaso
  and
  claude
  committed
  4d3db67
- MAINT: drop the integration review list
  
  gregcaporaso
  and
  claude
  committed
  c70481c
- IMP: remaining fixes from @gregcaporaso's review
  gregcaporaso
  committed
  036f6ff
- IMP: link the data section from the intro, metadata and closing text
  gregcaporaso
  committed
  49fdc62
- IMP: render hung DOI citations parenthetically
  
  gregcaporaso
  and
  claude
  committed
  54f3e99
- MAINT: update rescript gtdb url
  
  lizgehret
  authored and
  gregcaporaso
  committed
  8417953
- IMP: fixes from @lizgehret's review of the migrated tutorial
  
  gregcaporaso
  and
  lizgehret
  committed
  cf1de42