Update PEPkit publications list

[google-labs-jules]

Monthly PEPkit Publications Update

Automated literature search for new papers citing or using PEPkit tools using OpenAlex and Europe PMC APIs according to automation/update-publications.md.

Added Publications

Authors	Year	Title	Journal	DOI / Link	Evidence
Calzetti et al.	2026	Toward a more precise immunophenotypic and molecular definition of human cMoPs	Cell Reports	10.1016/j.celrep.2026.117970	cites:10.1093/nargab/lqab101

Candidate Rejection Summary

Candidate Identifier / DOI	Reason for Discard
10.21203/rs.3.rs-6171614/v1	Preprint version already linked under published DOI 10.1186/s40168-025-02223-6 in docs/data/publications.yaml
10.64898/2026.09.10.750716 (PPR1320807)	Europe PMC full-text hit for PEPATAC in FetchPA tool preprint; excluded per rule requiring citation or explicit verification
10.1158/1541-7786.mcr-26-0065 (42555234)	Europe PMC full-text hit without seed citation or software usage evidence
10.1016/j.ccell.2026.02.010 (41791379)	Europe PMC full-text hit without software usage evidence
10.1016/j.mocell.2026.100391 (42617749)	Europe PMC full-text hit without software usage evidence
10.3390/ijms27020870 (41596516)	Europe PMC full-text query hit on bare "PEPPRO" string in peptide-docking paper ("PepScorer::RMSD"); ambiguous/unrelated domain
10.1016/j.gmg.2025.100080 (41341694)	Europe PMC full-text hit without software usage evidence

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PR created automatically by Jules for task 7777727543155953566 started by @nsheff

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[nsheff]

duplicate

[google-labs-jules]

duplicate

Checked the OpenAlex records and repository metadata for entry 10.1016/j.celrep.2026.117970 ('Toward a more precise immunophenotypic and molecular definition of human cMoPs' by Calzetti et al.). Confirmed that W7213287153 directly references seed paper W3214910288 (PEPATAC, doi: 10.1093/nargab/lqab101), and the title/DOI do not duplicate any existing entries in docs/data/publications.yaml.