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@VirtualFlyBrain Virtual Fly Brain

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    132 repositories

    • geppetto-vfb

      Public
      VFB (v2) application
      JavaScript
      •
      Other
      •3•10•66•4•Updated Sep 20, 2026Sep 20, 2026

    • geppetto-client

      Public
      The web client of a Geppetto application
      JavaScript
      •
      Other
      •3•0•0•0•Updated Sep 20, 2026Sep 20, 2026

    • VFBquery

      Public
      A high-performance Python library providing optimized programmatic access to the VirtualFlyBrain knowledge graph, with faster queries through intelligent cachin…
      Python
      •
      Apache License 2.0
      •0•1•6•0•Updated Sep 20, 2026Sep 20, 2026

    • VFB2

      Public
      Virtual Fly Brain Documentation Site
      Python
      •
      MIT License
      •9•16•116•0•Updated Sep 18, 2026Sep 18, 2026

    • org.geppetto.frontend

      Public
      Geppetto frontend bundle (Web Application)
      JavaScript
      •
      Other
      •24•0•0•38•Updated Sep 16, 2026Sep 16, 2026

    • uk.ac.vfb.geppetto

      Public
      Virtual Fly Brain geppetto code
      Java
      •
      Other
      •1•0•12•17•Updated Sep 16, 2026Sep 16, 2026

    • VFB_reporting_results

      Public
      Repository containing the results of various data change and consistency checking.
      Python
      •
      Creative Commons Attribution 4.0 International
      •0•2•2•0•Updated Sep 16, 2026Sep 16, 2026

    • org.geppetto.datasources

      Public
      Java
      •
      Other
      •3•0•0•0•Updated Sep 16, 2026Sep 16, 2026

    • org.geppetto.core

      Public
      Geppetto core bundle
      Java
      •
      Other
      •11•0•0•0•Updated Sep 16, 2026Sep 16, 2026

    • org.geppetto.simulation

      Public
      Generic simulation bundle for Geppetto
      Java
      •
      Other
      •11•0•0•0•Updated Sep 16, 2026Sep 16, 2026

    • org.geppetto

      Public
      Geppetto - An open platform for life sciences data exploration, visualization and simulation
      Python
      •
      Other
      •50•0•0•0•Updated Sep 16, 2026Sep 16, 2026

    • VFBchat

      Public
      VFBchat client
      JavaScript
      •
      MIT License
      •0•0•3•0•Updated Sep 11, 2026Sep 11, 2026

    • VFB3-MCP

      Public
      Explore Virtual Fly Brain data directly through your favourite LLM with the new VFB Model Context Protocol (MCP) tool
      mcpneuroscienceontology
      mcpneuroscienceontologyconnectomicsdrosophila-melanogastervirtualflybrainllmmcp-server
      TypeScript
      •
      MIT License
      •2•8•0•1•Updated Sep 10, 2026Sep 10, 2026

    • neurofly2026-workshop

      Public
      Online Workshop
      HTML
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Sep 10, 2026Sep 10, 2026

    • ask-vfb

      Public
      Python
      •1•1•1•1•Updated Sep 7, 2026Sep 7, 2026

    • VFB_json_schema_indexer

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 5, 2026Sep 5, 2026

    • VFB_connect

      Public
      A library for querying VFB servers (neo4j, owlery, solr)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•6•30•0•Updated Sep 5, 2026Sep 5, 2026

    • owlery-cache-reload

      Public
      Preload all VFB owlery queries
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 5, 2026Sep 5, 2026

    • Docker-VFB-Neo4j-ProductionDB

      Public
      Neo4j server loaded with the VFB Production DB
      Shell
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Sep 4, 2026Sep 4, 2026

    • vfb-pipeline-polishing

      Public
      Final cypher steps after complete pipeline load
      Python
      •
      MIT License
      •0•0•3•0•Updated Sep 3, 2026Sep 3, 2026

    • VFB_connectomics_import

      Public
      A project to produce RDF/OWL representations of connectomics data for import to the VFB integration layer triple store.
      HTML
      •0•0•4•17•Updated Sep 3, 2026Sep 3, 2026

    • vfb-pipeline-collectdata

      Public
      Shell
      •
      Apache License 2.0
      •0•0•8•1•Updated Aug 31, 2026Aug 31, 2026

    • owl_cache

      Public
      a pre-caching and refresh sever to sit in front of owlery to speed up slow queries
      Shell
      •
      MIT License
      •0•0•0•0•Updated Aug 30, 2026Aug 30, 2026

    • Docker-CATMAID

      Public
      CATMAID server loaded with public EM data
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 28, 2026Aug 28, 2026

    • vfb-pipeline-dumps

      Public
      Pipeline that creates dumps from the triplestore for consumption by the downstream services
      Python
      •
      Apache License 2.0
      •0•0•14•3•Updated Aug 28, 2026Aug 28, 2026

    • vfb-scRNAseq-ontology

      Public
      An ontology of Drosophila melanogaster scRNAseq data pulled from FlyBase.
      Makefile
      •0•0•1•1•Updated Aug 27, 2026Aug 27, 2026

    • VFB

      Public
      Virtual Fly Brain
      HTML
      •
      GNU General Public License v2.0
      •5•17•48•0•Updated Aug 25, 2026Aug 25, 2026

    • .github

      Public
      Organisation profile and shared community health files for Virtual Fly Brain
      0•0•0•0•Updated Aug 25, 2026Aug 25, 2026

    • curation

      Public
      A repository of records specifying curation into the VFB Knowledge Base
      Python
      •
      Creative Commons Attribution 4.0 International
      •0•0•23•9•Updated Aug 25, 2026Aug 25, 2026

    • vfb-driver-ontology

      Public
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Aug 24, 2026Aug 24, 2026
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