Duke Marine Robotics and Remote Sensing Lab Tools and Code Resources

General Collection of Lab Tools, Code/Data from Papers, and Educational Resources

Tools in this Repo:

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Lab Code that is Maintained Elsewhere:

• Publicly Available API for automatic species identification and photogrammetric measurement of whales.

  • https://github.com/patrickcgray/cetacean_photogram_api

• Publicly Available photogrammetry scripts to improve the workflow.

  • https://github.com/cbirdferrer/photogrammetry-scripts

Open Access Code and Data from Lab Papers

• Code for Methods in Ecology and Evolution paper: "A Convolutional Neural Network for Detecting Sea Turtles in Drone Imagery"
  • Code: https://github.com/patrickcgray/cnn_sea_turtle_detection
  • Data: https://doi.org/10.5061/dryad.5h06vv2
  • Paper available at: https://doi.org/10.1111/2041-210X.13132
• Code for Methods in Ecology and Evolution paper: "Drones and Convolutional Neural Networks Facilitate Automated and Accurate Cetacean Species Identification and Photogrammetry"
  • Code: https://github.com/patrickcgray/cetacean_photogram
  • Data: http://doi.org/10.5061/dryad.7482v2n
  • Paper available at: https://doi.org/10.1111/2041-210X.13246

Open Source Educational Materials

• Educational Resources on Neural Networks for Ecology and Remote Sensing
  • https://github.com/patrickcgray/deep_learning_ecology
• Open Source Tutorial for GIS and Remote Sensing in Python
  • https://github.com/patrickcgray/open-geo-tutorial