Issues

• ram and threads

  kharchenkolab/dropEst#138 · Filter by author Flu09 opened on Feb 18, 2024
  1

• How are multimapping reads counted?

  kharchenkolab/dropEst#136 · Filter by author rbeagrie opened on Jul 21, 2023
  3

• list of real barcodes for Drop-seq technology

  kharchenkolab/dropEst#135 · Filter by author ste-depo opened on Nov 8, 2022
  1

• unable to parse out UMI

  kharchenkolab/dropEst#134 · Filter by author LYTech-code opened on Sep 6, 2022

• cmake command error?

  kharchenkolab/dropEst#131 · Filter by author hailingfang opened on Jun 21, 2022
  2

• Error while loading shared libraries: libbamtools

  kharchenkolab/dropEst#130 · Filter by author amufaamo opened on Apr 6, 2022
  1

• CMake is looking for BAMTOOLS_ROOT/lib but BAMTOOLS creates lib64

  kharchenkolab/dropEst#128 · Filter by author jjv5 opened on Jul 12, 2021
  3

• Conda install does not include libbamtools

  kharchenkolab/dropEst#127 · Filter by author jjv5 opened on Jul 9, 2021
  1

• Matrices for velocity analysis

  kharchenkolab/dropEst#126 · Filter by author benjytan88 opened on Jul 6, 2021
  1

• Way to integrate multiple files

  kharchenkolab/dropEst#125 · Filter by author jinyoung5484 opened on Jun 3, 2021

• Wrong output of dropTag in SPLiT-seq mode

  kharchenkolab/dropEst#124 · Filter by author realzhang opened on May 23, 2021
  1

• RNA velocity using exon matrix as spliced and intron + spanning as unspliced

  kharchenkolab/dropEst#123 · Filter by author sarajimenez opened on Dec 10, 2020
  1

• Error in CorrectUmiSequenceErrors

  kharchenkolab/dropEst#122 · Filter by author ZHIDIHUAYUAN opened on Dec 5, 2020

• wondering about merging steps

  kharchenkolab/dropEst#120 · Filter by author kkamiii opened on Oct 18, 2020

• function 'dataptr' not provided by package 'Rcpp'

  kharchenkolab/dropEst#115 · Filter by author mhassan opened on Oct 2, 2020
  1

• All CBs were filtered

  kharchenkolab/dropEst#114 · Filter by author bettycatherine opened on Aug 18, 2020
  6

• Add dropestr documentation

  documentation
  kharchenkolab/dropEst#113 · Filter by author VPetukhov opened on Aug 17, 2020
  1

• KeyError: "tag 'CB' not present"

  v3
  kharchenkolab/dropEst#112 · Filter by author kaplinserm opened on Aug 11, 2020
  2

• Barcode 'AAACCCATCTCCCAAT-1' has wrong length and WARNING: Can't find chromosome 'JH584301.1'

  kharchenkolab/dropEst#110 · Filter by author BeyondMyPast228 opened on Jul 20, 2020
  3

• Feasibility of including deduplicated alignments

  enhancement
  kharchenkolab/dropEst#109 · Filter by author ijhoskins opened on Jul 9, 2020
  1

• 10X v3 Unable to parse UMI

  v3
  kharchenkolab/dropEst#105 · Filter by author namitc opened on Apr 19, 2020
  4

• 10x V3 Chemistry

  bugenhancementv3
  kharchenkolab/dropEst#104 · Filter by author aelias1 opened on Mar 17, 2020
  2

• Parsing of CIGAR

  bugenhancement
  kharchenkolab/dropEst#101 · Filter by author chlee-tabin opened on Feb 24, 2020

• ERROR: unable to parse out UMI in--tried all suggestion mentioned previously

  v3
  kharchenkolab/dropEst#99 · Filter by author bony45 opened on Dec 24, 2019

• 10x.xml(45): expected =

  usage
  kharchenkolab/dropEst#98 · Filter by author bony45 opened on Dec 23, 2019
  1