Recently attempted to run PEPATAC from a pep on pephub. However, the project-level pipeline, pepatac collator, calls:
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project = peppy.Project(args.config_file) |
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#results_subdir = "/home/jps3dp/processed/pepatac_tutorial//processed/results_pipeline" |
This expects a config file with a .yaml file but for a PEP on PEPHub it must also be able to load a PEP from a registry path.
This discussion has come up here:
pepkit/peppy#462
Recently attempted to run PEPATAC from a pep on pephub. However, the project-level pipeline, pepatac collator, calls:
pepatac/pipelines/pepatac_collator.py
Lines 79 to 81 in 924aefa
This expects a config file with a
.yamlfile but for a PEP on PEPHub it must also be able to load a PEP from a registry path.This discussion has come up here:
pepkit/peppy#462