Release 0.10.0 - #271

Merged

nsheff merged 32 commits into

Sep 5, 2026

Commits on Jul 19, 2026

docs: fix broken URLs in README
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51995a8

Commits on Jul 20, 2026

feat(refget): persist logical sequence-data size in rgstore.json
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c652304
feat(refget): optional collection alias at FASTA import
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83c0135

Commits on Jul 21, 2026

fix(refget): make orphan sequence GC linear instead of quadratic
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7ecc71f
fix(refget): validate collection alias before committing the import
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743d443
Merge branch 'fix/orphan-gc-quadratic' into dev
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59d442f
Merge branch 'feat/store-size-tracking' into dev
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3442a7e
Merge branch 'feat/collection-alias-import' into dev
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02fef6c
perf(refget): hoist shard-dir rmdir out of orphan deletion loops
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9bd1fc5
Merge branch 'fix/orphan-rmdir-hoist' into dev
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6db3823

Commits on Jul 27, 2026

Commits on Jul 28, 2026

feat(refget): lock, atomic index writes, and merge-at-commit for RefgetStore
nsheff
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65a8caf

Commits on Jul 29, 2026

refget: commit only what this handle changed; drop tombstones
nsheff
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6a84792

Commits on Aug 6, 2026

remove dead error in overlaps
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c74f8ea

Commits on Aug 14, 2026

Skip FHR sidecar write when content is unchanged
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329c6d3

Commits on Aug 27, 2026

Fix encodedByteRange return type in wasm JS types
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485a9bf

Commits on Sep 3, 2026

refget: allow packed inserts in Encoded mode
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18af622

Commits on Sep 4, 2026

Trim refget read syscalls: fd-cache and statx
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90490ff

Commits on Sep 5, 2026

Resolve collection alias in refget export, see #270
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e997036
Use collection headers in refget export, see #270
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581f902
Use collection names in get_sequence_by_name
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8759c5d
drop full debuginfo
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1bef873
Bump versions for 0.10.0 release
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92ac2ba
Regenerate gtars-node lockfile for 0.8.0
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b33795b
Serialize stale lock breaking via break marker
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fdec8fb
Harden refget store commit and GC paths
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5c770cb
Load only the exported collection in refget export
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1c5e771
Add collection_alias to Python FASTA import
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2bb1894
Note review fixes in 0.10.0 changelog
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72c229f
Drop Changes.md; changelog lives in bedbase docs
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Document changelog location in RELEASING.md
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