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Computational analysis of Sleeping Beauty transposon integration sites: detection of non-B DNA structures (palindromes, G4Qs, triplexes) and integration site enrichment analysis

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Analysis Scripts

g4_and_palindromes_triplexes.py

Main script for detecting non-B DNA structures genome-wide.

palindrome_validation.py

Validation and filtering of detected palindromes.

Usage

See main README.md for detailed usage examples. DOI

About

Computational analysis of Sleeping Beauty transposon integration sites: detection of non-B DNA structures (palindromes, G4Qs, triplexes) and integration site enrichment analysis

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