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1. maftools maftools Public

   Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

   R 498 226

2. trackplot trackplot Public

   Generate IGV style locus tracks from bigWig files in R

   R 189 18

3. TCGAmutations TCGAmutations Public

   R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE

   R 102 25

4. basegraphics basegraphics Public

   Pretty plots using pure base graphics in R

   R 92 10

5. somaticfreq somaticfreq Public

   knowledge-based genotyping of cancer hotspots from the tumor BAM files

   C 22 4

6. genomics-introduction genomics-introduction Public

   Slide decks for introduction to genomics

   5