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Add option for Red Repeat Detector in JSON conversion module #48

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Merged
markquintontulloch merged 1 commit into from
Oct 19, 2026
Merged

Add option for Red Repeat Detector in JSON conversion module #48

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2 changes: 2 additions & 0 deletions modules/ensembl/features/convert_to_json/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -44,6 +44,8 @@ process FEATURES_CONVERT_TO_JSON {
if (analysis_logic_name) {
if (analysis_logic_name == 'trf') {
prefix = 'trf'
} else if (analysis_logic_name == 'repeatdetector') {
prefix = 'red'
} else if (analysis_logic_name == 'repeatmask_repbase') {
prefix = 'repeatmasker repbase'
} else if (analysis_logic_name == 'repeatmask_customlib') {
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1 change: 1 addition & 0 deletions modules/ensembl/features/convert_to_json/meta.yml
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Expand Up @@ -40,6 +40,7 @@ input:
- repeatmask_customlib
- repeatmask_repbase
- trf
- repeatdetector
- analysis_display_label:
type: string
description: Optional display label for the analysis.
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