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Brent Lab

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  1. Dual_Threshold_Optimization Dual_Threshold_Optimization Public

    Dual Threshold Optimization compares two ranked lists of features (e.g. genes) to determine the rank threshold for each list that minimizes the hypergeometric p-value of the overlap of features. It…

    Rust 5 2

  2. GOeval GOeval Public

    Gene Regulatory Network Evaluation Using Gene Ontology

    R 1

Repositories

Showing 10 of 29 repositories
  • tfbpshiny Public

    A shiny app to explore a collection of yeast binding and perturbation data collected by the brent lab

    BrentLab/tfbpshiny's past year of commit activity
    Python 0 3 9 1 Updated Oct 9, 2026
  • rossi_chipexo_peak_calling Public

    This stores scripts used to attempt to reproduce the data on yeastepigenome.org via chexmix, and scripts used to re-call peaks with macs3

    BrentLab/rossi_chipexo_peak_calling's past year of commit activity
    HTML 0 MIT 0 0 0 Updated Oct 7, 2026
  • htcf_spack_rstudio_server Public
    BrentLab/htcf_spack_rstudio_server's past year of commit activity
    Shell 1 0 0 0 Updated Oct 2, 2026
  • checseq_promoter_enrichment_slurm_pipeline Public

    checseq slurm pipeline based on Mahendrawada 2025

    BrentLab/checseq_promoter_enrichment_slurm_pipeline's past year of commit activity
    Shell 0 0 0 0 Updated Sep 11, 2026
  • CIDER Public
    BrentLab/CIDER's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Aug 21, 2026
  • tfbpmodeling Public

    A Python package for Transcription Factor Binding and Perturbation (TFBP) modeling that analyzes relationships between transcription factor binding and gene expression perturbations using LASSO

    BrentLab/tfbpmodeling's past year of commit activity
    Python 0 5 2 8 Updated Jun 19, 2026
  • METANet Public

    Data, scripts, references for reproducibility of METANets

    BrentLab/METANet's past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Jun 9, 2026
  • tfbpmodeling_paper_figures Public

    Code to create figures for the tfbpmodeling paper

    BrentLab/tfbpmodeling_paper_figures's past year of commit activity
    R 0 0 0 0 Updated Mar 27, 2026
  • tfbpapi Public archive

    A collection of classes and functions which serve as an API to django.tfbindingandperturbation.com

    BrentLab/tfbpapi's past year of commit activity
    Python 0 0 6 7 Updated Mar 16, 2026
  • cryptococcus_net Public

    A TF network map for cryptococcus

    BrentLab/cryptococcus_net's past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Oct 27, 2025
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