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BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

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  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 257 34

  2. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 127 21

  3. flexynesis flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    Python 110 38

  4. genomation genomation Public

    R package for genomic feature analysis and visualization

    HTML 80 23

  5. compgen2021 compgen2021 Public

    R 77 24

  6. PocketVina PocketVina Public

    GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementation of PocketVina

    C++ 74 12

Repositories

Showing 10 of 134 repositories
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    BIMSBbioinfo/flexynesis's past year of commit activity
    Python 110 38 13 2 Updated Sep 9, 2026
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon's past year of commit activity
    R 127 21 3 1 Updated Sep 8, 2026
  • anglemania Public

    Improved feature extraction for scRNA-seq dataset integration.

    BIMSBbioinfo/anglemania's past year of commit activity
    R 4 GPL-3.0 0 5 0 Updated Sep 2, 2026
  • protEncode Public

    Repository relating to the pipeline on using attention-weighted PLMs.

    BIMSBbioinfo/protEncode's past year of commit activity
    Jupyter Notebook 1 CC0-1.0 0 1 0 Updated Sep 1, 2026
  • pigx_bsseq Public

    bisulfite sequencing pipeline from fastq to methylation reports

    BIMSBbioinfo/pigx_bsseq's past year of commit activity
    Python 13 GPL-3.0 4 47 2 Updated Aug 25, 2026
  • VoltRonStore Public

    On-Disk support and dependancies for VoltRon

    BIMSBbioinfo/VoltRonStore's past year of commit activity
    R 0 1 0 0 Updated Aug 21, 2026
  • ImageArray Public

    a framework for on-disk and in-memory image arrays

    BIMSBbioinfo/ImageArray's past year of commit activity
    R 6 3 4 2 Updated Aug 10, 2026
  • pigx-common Public

    Common infrastructure used by all PiGx pipelines

    BIMSBbioinfo/pigx-common's past year of commit activity
    Python 0 GPL-3.0 1 1 2 Updated Jul 29, 2026
  • pyanglemania Public
    BIMSBbioinfo/pyanglemania's past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Jul 23, 2026
  • deconvR Public

    The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.

    BIMSBbioinfo/deconvR's past year of commit activity
    R 11 3 0 0 Updated Jul 22, 2026

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