Merge remaining stack: PRs #323-#329

[AkaraChen]

Stack Merge: PRs #323-#329

This PR merges the remaining PRs from the stack that started with #321 (already merged) and #322 (already merged as #330):

• perf(git): rely on watcher invalidation for refresh #323 perf(git): rely on watcher invalidation for refresh
• fix(settings): retry cached ipc after failure #324 fix(settings): retry cached ipc after failure
• fix(notes): serialize profile autosaves #325 fix(notes): serialize profile autosaves
• perf(db): index profile and pty lookup columns #326 perf(db): index profile and pty lookup columns
• chore(deps): resolve high audit advisories #327 chore(deps): resolve high audit advisories
• ci: check website and node tooling #328 ci: check website and node tooling
• test(e2e): cover desktop mutation smoke flow #329 test(e2e): cover desktop mutation smoke flow

Each commit corresponds to one PR in the original stack. Cherry-picked cleanly onto dev after #321 and #322 were squash-merged.

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Reviewing files that changed from the base of the PR and between 7a97368 and e34d34f.

⛔ Files ignored due to path filters (3)

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📒 Files selected for processing (19)

• .github/workflows/release.yml
• .github/workflows/tauri-smoke.yml
• .github/workflows/unit-tests.yml
• e2e-tests/README.md
• e2e-tests/package.json
• e2e-tests/test/smoke.test.mjs
• package.json
• src-tauri/migrations/2026-06-13-124905-0000_add_profile_session_indexes/down.sql
• src-tauri/migrations/2026-06-13-124905-0000_add_profile_session_indexes/up.sql
• src-tauri/tests/integration_migrations.rs
• src/features/git/hooks.test.tsx
• src/features/profiles/ProfileNotesEditor.test.tsx
• src/features/profiles/ProfileNotesEditor.tsx
• src/features/profiles/hooks.ts
• src/shared/lib/cachedPromise.test.ts
• src/shared/lib/cachedPromise.ts
• vite.config.ts
• website/next.config.mjs
• website/package.json

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[chatgpt-codex-connector]

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Reviewed commit: e34d34f342

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[chatgpt-codex-connector]

Serialize autosaves before dropping stale responses

When two note autosaves are in flight and the older IPC call finishes after the newer one, update_profile_notes has already written the old notes to SQLite before this guard returns; the guard only suppresses the cache update. In that race the projects cache can keep showing the newer notes as saved while list_projects after a reload returns the older notes, so the latest edit appears to be persisted but is lost. Queue/serialize saves per profile or enforce a revision on the backend before ignoring stale responses.

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