Issues

• multiple outputfiles after bamtofastq for same library

  10XGenomics/bamtofastq#198 · Filter by author TolgaDuz opened on Jan 28, 2025
  4

• Sort paired end .bam before run bamtofastq?

  10XGenomics/bamtofastq#185 · Filter by author Alvis-Jiang opened on Apr 20, 2024

• Strange read-splitting behaviour

  10XGenomics/bamtofastq#184 · Filter by author apredeus opened on Mar 11, 2024
  3

• Option --relaxed not working properly for bamtofastq-1.4.1

  10XGenomics/bamtofastq#151 · Filter by author JurMich opened on Jun 21, 2023
  2

• Release 1.4.2/1.5.0

  10XGenomics/bamtofastq#136 · Filter by author martin-g opened on Apr 18, 2023
  1

• bamtofastq generated 3 reads with triplicate of each reads

  10XGenomics/bamtofastq#134 · Filter by author Davidwei7 opened on Apr 9, 2023
  2

• Make the tool work with "cellranger vdj" bam outputs

  10XGenomics/bamtofastq#108 · Filter by author sralchemab opened on Nov 16, 2022
  1

• bamtofastqerror: Not a valid read pair: false, false

  10XGenomics/bamtofastq#103 · Filter by author MingwuDuan opened on Sep 30, 2022

• Is there a way to skip the error and continue converting?

  10XGenomics/bamtofastq#100 · Filter by author wangyiqing50 opened on Sep 21, 2022
  1

• bamtofastq depends on bxindex, which is part of Long Ranger

  10XGenomics/bamtofastq#99 · Filter by author slowkow opened on Sep 9, 2022

• How to set sample name of fastq file output

  10XGenomics/bamtofastq#97 · Filter by author Yijia-Jiang opened on Sep 2, 2022

• Directly turn bam file to UMI count?

  10XGenomics/bamtofastq#75 · Filter by author WT215 opened on May 5, 2022

• Post-error behaviour: bamtofastqerror: Didn't find both records for a paired end read. Is your BAM file complete?

  10XGenomics/bamtofastq#67 · Filter by author endeneon opened on Apr 12, 2022
  1

• Type = TenX

  10XGenomics/bamtofastq#28 · Filter by author MjelleLab opened on Sep 30, 2021

• cellranger-arc 1.0.0

  10XGenomics/bamtofastq#25 · Filter by author ZHIDIHUAYUAN opened on Mar 26, 2021

• How to install bamtofastq?

  10XGenomics/bamtofastq#22 · Filter by author BeyondMyPast228 opened on Jul 31, 2020
  2

• head_suffix missing index information

  10XGenomics/bamtofastq#17 · Filter by author wflynny opened on Mar 31, 2020