Issues

• Verify and remove usage of spatial-api

  hubmapconsortium/ingest-pipeline#1116 · Filter by author yuanzhou opened on Sep 17, 2025
  

• Move to Jira

  I
  hubmapconsortium/ingest-pipeline#695 · Filter by author diane-psc opened on Dec 15, 2022
  

• Bulk Upload support for versioned primary datasets

  IP
  hubmapconsortium/ingest-pipeline#700 · Filter by author shirey opened on Dec 13, 2022
  1

• Plan level of backups and exporting data

  5 pointsI
  hubmapconsortium/ingest-pipeline#679 · Filter by author diane-psc opened on Nov 18, 2022
  

• Ingest-pipeline deployed "manually"

  3 pointsI🛑 !
  hubmapconsortium/ingest-pipeline#678 · Filter by author diane-psc opened on Nov 18, 2022
  

• Merge assay types (CODEX & CODEX2); connect with Ivan

  I
  hubmapconsortium/ingest-pipeline#667 · Filter by author diane-psc opened on Nov 1, 2022
  1

  

• Puppetization

  3 pointsI
  hubmapconsortium/ingest-pipeline#662 · Filter by author diane-psc opened on Oct 20, 2022
  

• Create a DAG that can submit New primary datasets

  hubmapconsortium/ingest-pipeline#661 · Filter by author jswelling opened on Oct 20, 2022
  1

• Brainstorm ideas for improving AWS efficiency

  AWSI
  hubmapconsortium/ingest-pipeline#652 · Filter by author diane-psc opened on Oct 3, 2022
  

• In ingest-pipeline, modify reporting pipeline for new report format

  hubmapconsortium/ingest-pipeline#635 · Filter by author mccalluc opened on Jul 22, 2022

• Modify new_dataset_survey.py to get entities list from REST endpoint

  hubmapconsortium/ingest-pipeline#634 · Filter by author jswelling opened on Jul 15, 2022

• Data Ingestion SOP

  I
  hubmapconsortium/ingest-pipeline#630 · Filter by author jpuerto-psc opened on Jul 14, 2022
  1

  

• Enhance workflow audit logging

  I
  hubmapconsortium/ingest-pipeline#622 · Filter by author diane-psc opened on Jun 30, 2022

• Why isn't set_dataset_error firing for salmon_rnaseq_10x_sn?

  hubmapconsortium/ingest-pipeline#617 · Filter by author jswelling opened on Jun 25, 2022
  2

• Reprocess snareseq kidney data with annotations from Azimuth

  hubmapconsortium/ingest-pipeline#616 · Filter by author SFD5311 opened on Jun 23, 2022

• Do a series of experiments to determine what tasks the P100 GPUs can handle

  enhancementI
  hubmapconsortium/ingest-pipeline#612 · Filter by author jswelling opened on Jun 17, 2022

• Off-boarding/Hand-off Work

  I
  hubmapconsortium/ingest-pipeline#611 · Filter by author jpuerto-psc opened on Jun 16, 2022
  

• Ingest TMT datasets

  I🛑 !
  hubmapconsortium/ingest-pipeline#606 · Filter by author jpuerto-psc opened on Jun 16, 2022
  

• Ensure file system ACLs of all files/directories are consistent with the type and state of data.

  I🛑 !
  hubmapconsortium/ingest-pipeline#595 · Filter by author pdblood opened on Jun 2, 2022
  3

• Update metadata schema to support new CODEX ingestion

  hubmapconsortium/ingest-pipeline#594 · Filter by author diane-psc opened on Jun 2, 2022
  

• Process Cell DIVE datasets

  I🛑 !
  hubmapconsortium/ingest-pipeline#591 · Filter by author diane-psc opened on Jun 2, 2022
  

• Ingest first dataset of Vanderbilt CODEX

  I🛑 !
  hubmapconsortium/ingest-pipeline#566 · Filter by author jpuerto-psc opened on Apr 21, 2022
  

• Ask DBGap for a table with HuBMAP ID and experiment_id

  I
  hubmapconsortium/ingest-pipeline#559 · Filter by author jpuerto-psc opened on Apr 7, 2022
  1

  

• Re-test ATACSEQ - 04/07

  I🛑 !
  hubmapconsortium/ingest-pipeline#552 · Filter by author jpuerto-psc opened on Apr 7, 2022
  

• Discuss CUDA compatibility for a001.

  I
  hubmapconsortium/ingest-pipeline#550 · Filter by author jpuerto-psc opened on Apr 7, 2022
  1