Biosimulators_AMICI/pyproject.toml at dev · biosimulators/Biosimulators_AMICI · GitHub

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[build-system]
requires = ["setuptools>=80", "setuptools-scm[simple]>=8"]
build-backend = "setuptools.build_meta"

[project]
name = "biosimulators_amici"
dynamic = ["version"]
requires-python = ">=3.11"

description = "BioSimulators-compliant command-line interface to the AMICI simulation program <https://github.com/AMICI-dev/amici>."
readme = "README.md"
authors = [
  { name = "Center for Reproducible Biomedical Modeling", email = "info@biosimulators.org" }
]
license = "MIT"
keywords = [
  "BioSimulators",
  "systems biology",
  "computational biology",
  "mathematical model",
  "kinetic model",
  "simulation",
  "SBML",
  "SED-ML",
  "COMBINE",
  "OMEX",
]
classifiers = [
  "Development Status :: 3 - Alpha",
  "Intended Audience :: Science/Research",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
]

dependencies = [
    "biosimulators-utils[logging] >= 0.1.180",
    "amici >= 0.34.0, < 1.0.0",
    "kisao >= 2.33",
    "lxml",
    "numpy",
]

[project.optional-dependencies]
tests = [
    "biosimulators_utils[containers]",
    "python_dateutil",
]
doc = [
    "pydata-sphinx-theme",
    "sphinx >= 1.8",
]
all = [
    "biosimulators_utils[containers]",
    "python_dateutil",
    "pydata-sphinx-theme",
    "sphinx >= 1.8",
]

[project.urls]
Homepage = "https://github.com/biosimulators/Biosimulators_AMICI"
Download = "https://github.com/biosimulators/Biosimulators_AMICI"

[project.scripts]
biosimulators-amici = "biosimulators_amici.__main__:main"

[tool.setuptools.packages.find]
where = ["."]
exclude = ["tests", "tests.*"]